{
  "_id": "6a1628deacfb0bcc41d7290f",
  "Package": "condathis",
  "Title": "Run Any CLI Tool on a 'Conda' Environment",
  "Version": "0.1.3.9018",
  "Authors@R": "c(\nperson(\"Lucio\", \"Queiroz\", , \"luciorqueiroz@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-6090-1834\")),\nperson(\"Claudio\", \"Zanettini\", , \"claudio.zanettini@gmail.com\", role = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0000-0001-5043-8033\"))\n)",
  "Description": "Simplifies the execution of command line interface (CLI)\ntools within isolated and reproducible environments. It enables\nusers to effortlessly manage 'Conda' environments, execute\ncommand line tools, handle dependencies, and ensure\nreproducibility in their data analysis workflows.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/luciorq/condathis,\nhttps://luciorq.github.io/condathis/",
  "BugReports": "https://github.com/luciorq/condathis/issues",
  "VignetteBuilder": "quarto",
  "Config/Needs/dev": "devtools, pkgload, remotes, rcmdcheck, covr,\ntestthat, usethis, pak, knitr, quarto, pkgdown, roxygen2,\nroxygen2md, lintr, styler",
  "Config/Needs/website": "quarto",
  "Config/roxygen2/markdown": "TRUE",
  "Config/roxygen2/version": "8.0.0",
  "Config/testthat/edition": "3",
  "Config/testthat/parallel": "true",
  "Config/testthat/start-first": "create_env, rethrow_error,\nparse_match_spec, run_verbose_levels",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev",
  "Repository": "https://luciorq.r-universe.dev",
  "Date/Publication": "2026-05-26 22:31:06 UTC",
  "RemoteUrl": "https://github.com/luciorq/condathis",
  "RemoteRef": "HEAD",
  "RemoteSha": "7aa959281411ba1c331b47343f18b6334a5c9069",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 23:08:46 UTC",
    "User": "root"
  },
  "Author": "Lucio Queiroz [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0002-6090-1834>),\nClaudio Zanettini [aut, ctb] (ORCID:\n<https://orcid.org/0000-0001-5043-8033>)",
  "Maintainer": "Lucio Queiroz <luciorqueiroz@gmail.com>",
  "MD5sum": "111340ad111b422857c5bdd733df83bf",
  "_user": "luciorq",
  "_type": "src",
  "_file": "condathis_0.1.3.9018.tar.gz",
  "_fileid": "5c6730f4c33780ca287c0e0d1058befb3dfd3989bd7600cc0ab46390e24a422d",
  "_filesize": 450395,
  "_sha256": "5c6730f4c33780ca287c0e0d1058befb3dfd3989bd7600cc0ab46390e24a422d",
  "_created": "2026-05-26T23:08:46.000Z",
  "_published": "2026-05-26T23:12:30.306Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77976037635,
      "time": 175,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7228244793"
    },
    {
      "job": 77976037640,
      "time": 149,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7228239002"
    },
    {
      "job": 77976037624,
      "time": 194,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7228242768"
    },
    {
      "job": 77976037614,
      "time": 184,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7228240233"
    },
    {
      "job": 77975724051,
      "time": 167,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7228202862"
    },
    {
      "job": 77976037597,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7228230895"
    },
    {
      "job": 77976037619,
      "time": 129,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7228234308"
    },
    {
      "job": 77976037682,
      "time": 147,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7228239010"
    },
    {
      "job": 77976037673,
      "time": 166,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7228242504"
    }
  ],
  "_buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/luciorq/condathis",
  "_commit": {
    "id": "7aa959281411ba1c331b47343f18b6334a5c9069",
    "author": "luciorq <luciorqueiroz@gmail.com>",
    "committer": "luciorq <luciorqueiroz@gmail.com>",
    "message": "test: update tested version\n",
    "time": 1779834666
  },
  "_maintainer": {
    "name": "Lucio Queiroz",
    "email": "luciorqueiroz@gmail.com",
    "login": "luciorq",
    "linkedin": "in/luciorq",
    "orcid": "0000-0002-6090-1834",
    "twitter": "@luciorqueiroz",
    "description": "@marchionniLab at Weill Cornell Medicine\n| Computational & Systems Pathology",
    "uuid": 22479186
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "processx",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "withr",
      "role": "Imports"
    },
    {
      "package": "curl",
      "role": "Suggests"
    },
    {
      "package": "digest",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "quarto",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "luciorq",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-22",
      "n": 4
    },
    {
      "week": "2025-23",
      "n": 1
    },
    {
      "week": "2025-26",
      "n": 2
    },
    {
      "week": "2025-31",
      "n": 1
    },
    {
      "week": "2025-33",
      "n": 2
    },
    {
      "week": "2025-42",
      "n": 3
    },
    {
      "week": "2025-43",
      "n": 5
    },
    {
      "week": "2025-45",
      "n": 12
    },
    {
      "week": "2025-46",
      "n": 3
    },
    {
      "week": "2025-47",
      "n": 2
    },
    {
      "week": "2025-48",
      "n": 12
    },
    {
      "week": "2026-13",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 1
    },
    {
      "week": "2026-20",
      "n": 1
    },
    {
      "week": "2026-22",
      "n": 2
    }
  ],
  "_tags": [
    {
      "name": "v0.1.2",
      "date": "2025-06-02"
    },
    {
      "name": "v0.1.3",
      "date": "2025-11-07"
    }
  ],
  "_topics": [
    "bioinformatics",
    "conda",
    "reproducibility",
    "reproducible-research",
    "quarto"
  ],
  "_stars": 14,
  "_contributors": [
    {
      "user": "luciorq",
      "count": 370,
      "uuid": 22479186
    },
    {
      "user": "c1au6i0",
      "count": 3,
      "uuid": 47305205
    }
  ],
  "_userbio": {
    "uuid": 22479186,
    "type": "user",
    "name": "Lucio Queiroz",
    "description": "@marchionniLab at Weill Cornell Medicine\r\n| Computational & Systems Pathology"
  },
  "_downloads": {
    "count": 177,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/condathis"
  },
  "_devurl": "https://github.com/luciorq/condathis",
  "_pkgdown": "https://luciorq.github.io/condathis/",
  "_searchresults": 9,
  "_quarto": true,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/condathis.html",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/luciorq/condathis",
  "_realowner": "luciorq",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2024-12-11"
    },
    {
      "version": "0.1.1",
      "date": "2025-01-23"
    },
    {
      "version": "0.1.2",
      "date": "2025-06-02"
    },
    {
      "version": "0.1.3",
      "date": "2025-11-08"
    }
  ],
  "_exports": [
    "clean_cache",
    "create_env",
    "env_exists",
    "get_env_dir",
    "get_install_dir",
    "get_sys_arch",
    "install_micromamba",
    "install_packages",
    "list_envs",
    "list_packages",
    "micromamba_bin_path",
    "parse_output",
    "remove_env",
    "run",
    "run_bin",
    "with_sandbox_dir"
  ],
  "_help": [
    {
      "page": "clean_cache",
      "title": "Clean Conda Cache",
      "topics": [
        "clean_cache"
      ]
    },
    {
      "page": "create_env",
      "title": "Create a Conda Environment",
      "topics": [
        "create_env"
      ]
    },
    {
      "page": "env_exists",
      "title": "Check If Environment Already exists",
      "topics": [
        "env_exists"
      ]
    },
    {
      "page": "get_env_dir",
      "title": "Retrieve Path To Environment",
      "topics": [
        "get_env_dir"
      ]
    },
    {
      "page": "get_install_dir",
      "title": "Retrieve and Create the 'condathis' Data Directory",
      "topics": [
        "get_install_dir"
      ]
    },
    {
      "page": "get_sys_arch",
      "title": "Retrieve Operating System and CPU Architecture",
      "topics": [
        "get_sys_arch"
      ]
    },
    {
      "page": "install_micromamba",
      "title": "Install Micromamba Binaries in the 'condathis' Controlled Path",
      "topics": [
        "install_micromamba"
      ]
    },
    {
      "page": "install_packages",
      "title": "Install Packages in a Existing Conda Environment",
      "topics": [
        "install_packages"
      ]
    },
    {
      "page": "list_envs",
      "title": "List Installed Conda Environments",
      "topics": [
        "list_envs"
      ]
    },
    {
      "page": "list_packages",
      "title": "List Packages Installed in a Conda Environment",
      "topics": [
        "list_packages"
      ]
    },
    {
      "page": "micromamba_bin_path",
      "title": "Retrieve Path to the 'micromamba' Executable",
      "topics": [
        "micromamba_bin_path"
      ]
    },
    {
      "page": "parse_output",
      "title": "Parse the output of a Condathis command",
      "topics": [
        "parse_output"
      ]
    },
    {
      "page": "remove_env",
      "title": "Remove a Conda Environment",
      "topics": [
        "remove_env"
      ]
    },
    {
      "page": "run",
      "title": "Run Command-Line Tools in a Conda Environment",
      "topics": [
        "run"
      ]
    },
    {
      "page": "run_bin",
      "title": "Run a Binary from a Conda Environment Without Environment Activation",
      "topics": [
        "run_bin"
      ]
    },
    {
      "page": "with_sandbox_dir",
      "title": "Execute Code in a Temporary Directory",
      "topics": [
        "with_sandbox_dir"
      ]
    }
  ],
  "_pkglogo": "https://github.com/luciorq/condathis/raw/HEAD/man/figures/logo.svg",
  "_readme": "https://github.com/luciorq/condathis/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "fs",
    "glue",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "processx",
    "ps",
    "R6",
    "rlang",
    "stringi",
    "stringr",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "condathis.qmd",
      "filename": "condathis.html",
      "title": "Introduction to condathis",
      "engine": "quarto::html",
      "headings": [],
      "created": "2025-10-18 15:30:13",
      "modified": "2026-03-29 15:37:23",
      "commits": 8
    }
  ],
  "_score": 6.021189299069938,
  "_indexed": true,
  "_nocasepkg": "condathis",
  "_universes": [
    "luciorq"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.3.9018",
      "date": "2026-05-26T23:11:18.000Z",
      "distro": "noble",
      "commit": "7aa959281411ba1c331b47343f18b6334a5c9069",
      "fileid": "6333819f27e1dd4b6149201aaa2bb60d4e9d34a1ec9390a4bec587032e255800",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.3.9018",
      "date": "2026-05-26T23:10:57.000Z",
      "distro": "noble",
      "commit": "7aa959281411ba1c331b47343f18b6334a5c9069",
      "fileid": "b22e626847ce37b2b24f748c70147a23e51b9df6947945e9c74dc321314fa607",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.3.9018",
      "date": "2026-05-26T23:11:18.000Z",
      "commit": "7aa959281411ba1c331b47343f18b6334a5c9069",
      "fileid": "0407f87df1b078d797d13dce22afec02d1e90d9901510ad74ceb9fcf45f76db3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.3.9018",
      "date": "2026-05-26T23:11:04.000Z",
      "commit": "7aa959281411ba1c331b47343f18b6334a5c9069",
      "fileid": "1018af23ef5a2a768425f0b644975a94d7ea9882094f659b102d5052adcd644f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.3.9018",
      "date": "2026-05-26T23:10:55.000Z",
      "commit": "7aa959281411ba1c331b47343f18b6334a5c9069",
      "fileid": "4f24fee794c8bce932cafb458bdcf3cc34c96a4b4c00942323912a8d693839ad",
      "status": "success",
      "buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.3.9018",
      "date": "2026-05-26T23:10:19.000Z",
      "commit": "7aa959281411ba1c331b47343f18b6334a5c9069",
      "fileid": "ca5829bcaa3385ed26ca1f81c79394fc0b014d58d53a17eeaef3a0199c63df32",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.3.9018",
      "date": "2026-05-26T23:10:37.000Z",
      "commit": "7aa959281411ba1c331b47343f18b6334a5c9069",
      "fileid": "afdc5f47b882ea3a11f35a60c184193802e9e6b8ccbc00fdaa4e610eb64a6387",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.3.9018",
      "date": "2026-05-26T23:10:42.000Z",
      "commit": "7aa959281411ba1c331b47343f18b6334a5c9069",
      "fileid": "62c5bafb14b09b9e643c2a3674265489c6df7cb98eba95ed215b043e0b67953c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luciorq/actions/runs/26480256211"
    }
  ]
}