Package: isoformic
Title: Isoform-Level Biological Interpretation of Transcriptomic Data
Version: 0.1.2.9019
Authors@R: c(
    person("Lucio Rezende", "Queiroz", , "luciorqueiroz@gmail.com", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-6090-1834")),
    person("Lucio Rezende", "Queiroz", , "lrq4001@med.cornell.edu", role = c("aut", "ctb")),
    person("Izabela Mamede", "Conceicao", , "iza.mamede@gmail.com", role = c("aut", "ctb"),
           comment = c(ORCID = "0000-0002-0707-5588")),
    person("Carlos", "Mata-Machado", , "carlosaugustodmm@gmail.com", role = c("aut", "ctb"),
           comment = c(ORCID = "0009-0005-6615-6563")),
    person("Luigi", "Marchionni", , "lum4003@med.cornell.edu", role = c("aut", "ctb"),
           comment = c(ORCID = "0000-0002-7336-8071")),
    person("Gloria", "Franco", , "gfranco@ufmg.br", role = c("aut", "ctb"),
           comment = c(ORCID = "0000-0001-5245-2365"))
  )
Description: Isoform-level biological interpretation of transcriptomic
        data.
License: MIT + file LICENSE
URL: https://github.com/luciorq/isoformic,
        https://luciorq.github.io/isoformic/
BugReports: https://github.com/luciorq/isoformic/issues
Depends: R (>= 4.3)
Imports: arrow, cli, DBI, dplyr, duckdb, fs, ggplot2, ggpubr, ggrepel,
        glue, purrr (>= 1.1.0), readr, rlang, S7 (>= 0.2.0), stringr,
        tibble, tidyr, utils, vroom, withr
Suggests: AnnotationHub, apeglm, BSgenome.Hsapiens.NCBI.GRCh38, carrier
        (>= 0.3.0), condathis, curl, DESeq2, fgsea, fishpond,
        GenomeInfoDbData, GenomicFeatures, IRanges, knitr, mirai (>=
        2.5.1), org.Hs.eg.db, patchwork, plotgardener, quarto,
        SummarizedExperiment, testthat (>= 3.0.0),
        TxDb.Hsapiens.UCSC.hg38.knownGene, txdbmaker, tximeta,
        tximport, viridis
VignetteBuilder: quarto
BiocViews:
Config/Needs/dev: devtools, pkgload, remotes, rcmdcheck, covr,
        testthat, usethis, pak, knitr, quarto, pkgdown, roxygen2,
        roxygen2md, lintr, styler
Config/Needs/website: quarto
Config/roxygen2/markdown: TRUE
Config/roxygen2/version: 8.0.0
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libx11-dev xz-utils
Repository: https://luciorq.r-universe.dev
Date/Publication: 2026-07-07 14:27:08 UTC
RemoteUrl: https://github.com/luciorq/isoformic
RemoteRef: HEAD
RemoteSha: 9ed8b755fd209dc93ac3d15e1ced9062a3727f16
NeedsCompilation: no
Packaged: 2026-07-07 17:22:07 UTC; root
Author: Lucio Rezende Queiroz [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6090-1834>),
  Lucio Rezende Queiroz [aut, ctb],
  Izabela Mamede Conceicao [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-0707-5588>),
  Carlos Mata-Machado [aut, ctb] (ORCID:
    <https://orcid.org/0009-0005-6615-6563>),
  Luigi Marchionni [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-7336-8071>),
  Gloria Franco [aut, ctb] (ORCID:
    <https://orcid.org/0000-0001-5245-2365>)
Maintainer: Lucio Rezende Queiroz <luciorqueiroz@gmail.com>