Package: isoformic
Title: Isoform-Level Biological Interpretation of Transcriptomic Data
Version: 0.1.2.9017
Authors@R: c(
    person("Lucio Rezende", "Queiroz", , "luciorqueiroz@gmail.com", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-6090-1834")),
    person("Lucio Rezende", "Queiroz", , "lrq4001@med.cornell.edu", role = c("aut", "ctb")),
    person("Izabela Mamede", "Conceicao", , "iza.mamede@gmail.com", role = c("aut", "ctb"),
           comment = c(ORCID = "0000-0002-0707-5588")),
    person("Luigi", "Marchionni", , "lum4003@med.cornell.edu", role = c("aut", "ctb"),
           comment = c(ORCID = "0000-0002-7336-8071")),
    person("Gloria", "Franco", , "gfranco@ufmg.br", role = c("aut", "ctb"),
           comment = c(ORCID = "0000-0001-5245-2365"))
  )
Description: Isoform-level biological interpretation of transcriptomic
        data.
License: MIT + file LICENSE
URL: https://github.com/luciorq/isoformic,
        https://luciorq.github.io/isoformic/
BugReports: https://github.com/luciorq/isoformic/issues
Depends: R (>= 4.3)
Imports: arrow, cli, DBI, dplyr, duckdb, fs, ggplot2, ggpubr, ggrepel,
        glue, plotgardener, purrr (>= 1.1.0), readr, rlang, S7 (>=
        0.2.0), stringr, tibble, tidyr, txdbmaker, utils, vroom, withr
Suggests: AnnotationHub, apeglm, BSgenome.Hsapiens.NCBI.GRCh38, carrier
        (>= 0.3.0), condathis, curl, DESeq2, fgsea, fishpond,
        GenomeInfoDbData, GenomicFeatures, IRanges, knitr, mirai (>=
        2.5.1), org.Hs.eg.db, patchwork, quarto, SummarizedExperiment,
        testthat (>= 3.0.0), TxDb.Hsapiens.UCSC.hg38.knownGene,
        tximeta, tximport, viridis
VignetteBuilder: quarto
BiocViews:
Config/Needs/website: quarto
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev libx11-dev
        xz-utils zlib1g-dev
Repository: https://luciorq.r-universe.dev
Date/Publication: 2025-11-11 23:41:45 UTC
RemoteUrl: https://github.com/luciorq/isoformic
RemoteRef: HEAD
RemoteSha: c1719472c961ff4938dc56d2f48674f1987ea6d1
NeedsCompilation: no
Packaged: 2026-06-10 08:12:31 UTC; root
Author: Lucio Rezende Queiroz [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6090-1834>),
  Lucio Rezende Queiroz [aut, ctb],
  Izabela Mamede Conceicao [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-0707-5588>),
  Luigi Marchionni [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-7336-8071>),
  Gloria Franco [aut, ctb] (ORCID:
    <https://orcid.org/0000-0001-5245-2365>)
Maintainer: Lucio Rezende Queiroz <luciorqueiroz@gmail.com>