Package: condathis 0.1.3.9018
condathis: Run Any CLI Tool on a 'Conda' Environment
Simplifies the execution of command line interface (CLI) tools within isolated and reproducible environments. It enables users to effortlessly manage 'Conda' environments, execute command line tools, handle dependencies, and ensure reproducibility in their data analysis workflows.
Authors:
condathis_0.1.3.9018.tar.gz
condathis_0.1.3.9018.zip(r-4.7)condathis_0.1.3.9018.zip(r-4.6)condathis_0.1.3.9018.zip(r-4.5)
condathis_0.1.3.9018.tgz(r-4.6-any)condathis_0.1.3.9018.tgz(r-4.5-any)
condathis_0.1.3.9018.tar.gz(r-4.7-any)condathis_0.1.3.9018.tar.gz(r-4.6-any)
condathis_0.1.3.9018.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
condathis/json (API)
NEWS
| # Install 'condathis' in R: |
| install.packages('condathis', repos = c('https://luciorq.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/luciorq/condathis/issues
Pkgdown/docs site:https://luciorq.github.io
bioinformaticscondareproducibilityreproducible-researchquarto
Last updated from:7aa9592814. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 175 | ||
| source / vignettes | OK | 167 | ||
| linux-release-x86_64 | OK | 149 | ||
| macos-release-arm64 | OK | 184 | ||
| macos-oldrel-arm64 | OK | 194 | ||
| windows-devel | OK | 129 | ||
| windows-release | OK | 166 | ||
| windows-oldrel | OK | 147 | ||
| wasm-release | OK | 114 |
Exports:clean_cachecreate_envenv_existsget_env_dirget_install_dirget_sys_archinstall_micromambainstall_packageslist_envslist_packagesmicromamba_bin_pathparse_outputremove_envrunrun_binwith_sandbox_dir
Dependencies:clifsgluejsonlitelifecyclemagrittrprocessxpsR6rlangstringistringrvctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Clean Conda Cache | clean_cache |
| Create a Conda Environment | create_env |
| Check If Environment Already exists | env_exists |
| Retrieve Path To Environment | get_env_dir |
| Retrieve and Create the 'condathis' Data Directory | get_install_dir |
| Retrieve Operating System and CPU Architecture | get_sys_arch |
| Install Micromamba Binaries in the 'condathis' Controlled Path | install_micromamba |
| Install Packages in a Existing Conda Environment | install_packages |
| List Installed Conda Environments | list_envs |
| List Packages Installed in a Conda Environment | list_packages |
| Retrieve Path to the 'micromamba' Executable | micromamba_bin_path |
| Parse the output of a Condathis command | parse_output |
| Remove a Conda Environment | remove_env |
| Run Command-Line Tools in a Conda Environment | run |
| Run a Binary from a Conda Environment Without Environment Activation | run_bin |
| Execute Code in a Temporary Directory | with_sandbox_dir |
