Introduction | The Problem: Reproducible CLI Execution | The condathis Solution | Step 1: Create an Environment | Step 2: Run the Tool | Putting It All Together | Why condathis?
Package: condathis 0.1.4
condathis: Run Any CLI Tool on a 'Conda' Environment
Simplifies the execution of command line interface (CLI) tools within isolated and reproducible environments. It enables users to effortlessly manage 'Conda' environments, execute command line tools, handle dependencies, and ensure reproducibility in their data analysis workflows.
Authors:
condathis_0.1.4.tar.gz
condathis_0.1.4.zip(r-4.7)condathis_0.1.4.zip(r-4.6)condathis_0.1.4.zip(r-4.5)
condathis_0.1.4.tgz(r-4.6-any)condathis_0.1.4.tgz(r-4.5-any)
condathis_0.1.4.tar.gz(r-4.7-any)condathis_0.1.4.tar.gz(r-4.6-any)
condathis_0.1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
condathis/json (API)
| # Install 'condathis' in R: |
| install.packages('condathis', repos = c('https://luciorq.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/luciorq/condathis/issues
Pkgdown/docs site:https://luciorq.github.io
bioinformaticscondareproducibilityreproducible-researchquarto
Last updated from:6074b46235. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 138 | ||
| source / vignettes | OK | 184 | ||
| linux-release-x86_64 | OK | 153 | ||
| macos-release-arm64 | OK | 130 | ||
| macos-oldrel-arm64 | OK | 248 | ||
| windows-devel | OK | 191 | ||
| windows-release | OK | 147 | ||
| windows-oldrel | OK | 144 | ||
| wasm-release | OK | 99 |
Exports:clean_cachecreate_envenv_existsget_env_dirget_install_dirget_sys_archinstall_micromambainstall_packageslist_envslist_packagesmicromamba_bin_pathparse_outputremove_envrunrun_binwith_sandbox_dir
Dependencies:clifsgluejsonlitelifecyclemagrittrprocessxpsR6rlangstringistringrvctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Clean Conda cache | clean_cache |
| Create a Conda environment | create_env |
| Check whether a Conda environment exists | env_exists |
| Get an environment directory path | get_env_dir |
| Get the 'condathis' data directory | get_install_dir |
| Get operating system and CPU architecture | get_sys_arch |
| Install micromamba binaries in the managed condathis path | install_micromamba |
| Install packages in a Conda environment | install_packages |
| List Conda environments managed by condathis | list_envs |
| List packages in a Conda environment | list_packages |
| Get the managed 'micromamba' binary path | micromamba_bin_path |
| Parse command output text | parse_output |
| Remove a Conda environment | remove_env |
| Run a command inside a Conda environment | run |
| Run a binary without environment activation | run_bin |
| Execute code in an isolated temporary environment | with_sandbox_dir |
