Package: condathis 0.1.1.9002
condathis: Run Any CLI Tool on a 'Conda' Environment
Simplifies the execution of command line interface (CLI) tools within isolated and reproducible environments. It enables users to effortlessly manage 'Conda' environments, execute command line tools, handle dependencies, and ensure reproducibility in their data analysis workflows.
Authors:
condathis_0.1.1.9002.tar.gz
condathis_0.1.1.9002.zip(r-4.5)condathis_0.1.1.9002.zip(r-4.4)condathis_0.1.1.9002.zip(r-4.3)
condathis_0.1.1.9002.tgz(r-4.5-any)condathis_0.1.1.9002.tgz(r-4.4-any)condathis_0.1.1.9002.tgz(r-4.3-any)
condathis_0.1.1.9002.tar.gz(r-4.5-noble)condathis_0.1.1.9002.tar.gz(r-4.4-noble)
condathis_0.1.1.9002.tgz(r-4.4-emscripten)condathis_0.1.1.9002.tgz(r-4.3-emscripten)
condathis.pdf |condathis.html✨
condathis/json (API)
NEWS
| # Install 'condathis' in R: |
| install.packages('condathis', repos = c('https://luciorq.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/luciorq/condathis/issues
bioinformaticscondareproducibilityreproducible-research
Last updated 5 days agofrom:dd1d1ef79e. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 15 2025 |
| R-4.5-win | OK | Feb 15 2025 |
| R-4.5-mac | OK | Feb 15 2025 |
| R-4.5-linux | OK | Feb 15 2025 |
| R-4.4-win | OK | Feb 15 2025 |
| R-4.4-mac | OK | Feb 15 2025 |
| R-4.3-win | OK | Feb 15 2025 |
| R-4.3-mac | OK | Feb 15 2025 |
Exports:create_envenv_existsget_env_dirget_install_dirget_sys_archinstall_micromambainstall_packageslist_envslist_packagesmicromamba_bin_pathparse_outputremove_envrunrun_binwith_sandbox_dir
Dependencies:clifansifsgluejsonlitelifecyclemagrittrpillarpkgconfigprocessxpsR6rlangstringistringrtibbleutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a Conda Environment | create_env |
| Check If Environment Already exists | env_exists |
| Retrieve Path To Environment | get_env_dir |
| Retrieve and Create the 'condathis' Data Directory | get_install_dir |
| Retrieve Operating System and CPU Architecture | get_sys_arch |
| Install Micromamba Binaries in the 'condathis' Controlled Path | install_micromamba |
| Install Packages in a Existing Conda Environment | install_packages |
| List Installed Conda Environments | list_envs |
| List Packages Installed in a Conda Environment | list_packages |
| Retrieve Path to the 'micromamba' Executable | micromamba_bin_path |
| Parse the output of a Condathis command | parse_output |
| Remove a Conda Environment | remove_env |
| Run Command-Line Tools in a Conda Environment | run |
| Run a Binary from a Conda Environment Without Environment Activation | run_bin |
| Execute Code in a Temporary Directory | with_sandbox_dir |
