Package: isoformic 0.1.1.9000

isoformic: Isoformic: isoform-level biological interpretation of transcriptomic data

Isoform-level biological interpretation of transcriptomic data.

Authors:Lucio Rezende Queiroz [aut, cre], Izabela Mamede Conceicao [aut, ctb], Luigi Marchionni [aut, ctb], Gloria Franco [aut, ctb]

# Install 'isoformic' in R:

install.packages('isoformic', repos = c('https://luciorq.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Last updated 4 months agofrom:3c711b1930. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Help page	Topics
Check if Isoformic 'mae' have a list 'isoformic' slot	check_mae_isoformic_is_list
Check if Isoformic 'mae' have a 'tx_to_gene'	check_mae_isoformic_tx_to_gene
Check if content of metadata level slot is a string.	check_se_metadata_level_length
Check if content of metadata level slot is a string.	check_se_metadata_level_type
Create Isoformic Object from SummarizedExperiment	create_isoformic_mae_from_se
Download Reference Files From GENCODE	download_reference
Add Differential Gene Expression Results to Transcript Table	is_deg_sig
Merge Gene and Transcript Level Differential Expression Tables	join_DEG_DET
Create Transcript to Gene Relationship Table	make_tx_to_gene
Edit the lncRNA start and end table Table of lncRNA starts and ends plus a value to add	modify_lnc_ranges
Plot Log2 Fold-Change Results	plot_log2FC
Plot Transcript Genomic Context	plot_tx_context
Plot Transcript per gene expression	plot_tx_expr
Prepare Annotation	prepare_annotation
Prepare Exon based Position Annotation Table	prepare_exon_annotation
Prepare Data for Profile Plot	prepare_profile_data
Run Functional Analysis	run_enrichment
Run Swish Differential Expression	run_swish_pairwise
Return 'SummarizedExperiment' Experiment Level	se_experiment_level
Validate Isoformic Object	validate_isoformic_mae